Browse entries in the PDBbind-CN Database

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Related entries of code: 4emf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4emrRCSB PDB    PDBbind246aa, >4EMR_1|Chain... at 100%
4i47RCSB PDB    PDBbind246aa, >4I47_1|Chain... at 100%
4zt8RCSB PDB    PDBbind246aa, >4ZT8_1|Chain... at 100%
5csoRCSB PDB    PDBbind246aa, >5CSO_1|Chain... at 100%
5cstRCSB PDB    PDBbind246aa, >5CST_1|Chain... at 100%
5y48RCSB PDB    PDBbind246aa, >5Y48_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3m93RCSB PDB    PDBbindM7G
4b6uRCSB PDB    PDBbindM7G
4or4RCSB PDB    PDBbindM7G
5bv3RCSB PDB    PDBbindM7G

Entry Information
PDB ID4emf
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamerRNA N-glycosidase
Ligand NameM7G
EC.Number E.C.
Resolution 1.77(Å)
Affinity (Kd/Ki/IC50)Kd=83.9nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Proteins Vol. 81: pp. 896-905
Ligand Properties
Formula C11H21N5O11P2
Molecular Weight 461.259
Exact Mass 461.071
No. of atoms 50
No. of bonds 52
Polar Surface Area 279.36
LOGP Value -4.30      (Computed with XLOGP3)
-3.10      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D9J2T9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

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