Browse entries in the PDBbind-CN Database

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Related entries of code: 5y48
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4emfRCSB PDB    PDBbind246aa, >4EMF_1|Chain... *
4emrRCSB PDB    PDBbind246aa, >4EMR_1|Chain... at 100%
4i47RCSB PDB    PDBbind246aa, >4I47_1|Chain... at 100%
4zt8RCSB PDB    PDBbind246aa, >4ZT8_1|Chain... at 100%
5csoRCSB PDB    PDBbind246aa, >5CSO_1|Chain... at 100%
5cstRCSB PDB    PDBbind246aa, >5CST_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ui0RCSB PDB    PDBbindURA
6ajrRCSB PDB    PDBbindURA

Entry Information
PDB ID5y48
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRibosome inactivating protein
Ligand NameURA
EC.Number E.C.3.2.2.22
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=1.4uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Proteins Vol. 87: pp. 99-109
Ligand Properties
Formula C4H4N2O2
Molecular Weight 112.087
Exact Mass 112.027
No. of atoms 12
No. of bonds 12
Polar Surface Area 58.53
LOGP Value -0.90      (Computed with XLOGP3)
-0.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D9J2T9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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