Browse entries in the PDBbind-CN Database

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Related entries of code: 4g0q
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4g0pRCSB PDB    PDBbind147aa, >4G0P_1|Chain... *
4g0yRCSB PDB    PDBbind147aa, >4G0Y_1|Chain... at 100%
4g0zRCSB PDB    PDBbind147aa, >4G0Z_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1rnmRCSB PDB    PDBbindC5P
3djxRCSB PDB    PDBbindC5P
5dv2RCSB PDB    PDBbindC5P
5km2RCSB PDB    PDBbindC5P
6oh2RCSB PDB    PDBbindC5P
6i1rRCSB PDB    PDBbindC5P

Entry Information
PDB ID4g0q
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameProtein argonaute 1
Ligand NameC5P
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=3.00mM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Embo J. Vol. 31: pp. 3588-3595
Ligand Properties
Formula C9H16N3O8P
Molecular Weight 325.212
Exact Mass 325.068
No. of atoms 37
No. of bonds 38
Polar Surface Area 195.36
LOGP Value -2.93      (Computed with XLOGP3)
-2.88      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O04379  
Entrez Gene IDNCBI Entrez Gene ID: 841262  
ASDInformation of known allosteric effects of PDB entries

 
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