Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5dv2
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5dv4RCSB PDB    PDBbind398aa, >5DV4_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1rnmRCSB PDB    PDBbindC5P
3djxRCSB PDB    PDBbindC5P
4g0qRCSB PDB    PDBbindC5P
5km2RCSB PDB    PDBbindC5P
6oh2RCSB PDB    PDBbindC5P
6i1rRCSB PDB    PDBbindC5P

Entry Information
PDB ID5dv2
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman CNOT6L
Ligand NameC5P
EC.Number E.C.3.1.13.4
Resolution 2.07(Å)
Affinity (Kd/Ki/IC50)IC50=1250uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Febs Lett. Vol. 590: pp. 1270-1279
Ligand Properties
Formula C9H16N3O8P
Molecular Weight 325.212
Exact Mass 325.068
No. of atoms 37
No. of bonds 38
Polar Surface Area 195.36
LOGP Value -2.93      (Computed with XLOGP3)
-2.88      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q96LI5  
Entrez Gene IDNCBI Entrez Gene ID: 246175  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com