Browse entries in the PDBbind-CN Database

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Related entries of code: 6b8y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1py5RCSB PDB    PDBbind326aa, >1PY5_1|Chain... at 100%
1rw8RCSB PDB    PDBbind301aa, >1RW8_1|Chain... at 100%
1vjyRCSB PDB    PDBbind303aa, >1VJY_1|Chain... at 100%
2wotRCSB PDB    PDBbind306aa, >2WOT_1|Chain... at 99%
2wouRCSB PDB    PDBbind306aa, >2WOU_1|Chain... at 99%
2x7oRCSB PDB    PDBbind342aa, >2X7O_1|Chains... at 100%
3faaRCSB PDB    PDBbind342aa, >3FAA_1|Chains... at 100%
3gxlRCSB PDB    PDBbind303aa, >3GXL_1|Chain... at 100%
3hmmRCSB PDB    PDBbind303aa, >3HMM_1|Chain... at 100%
3kcfRCSB PDB    PDBbind342aa, >3KCF_1|Chains... at 100%
3tzmRCSB PDB    PDBbind309aa, >3TZM_1|Chain... at 98%
5e8wRCSB PDB    PDBbind307aa, >5E8W_1|Chain... at 98%
5e8zRCSB PDB    PDBbind307aa, >5E8Z_1|Chain... at 98%
5e90RCSB PDB    PDBbind307aa, >5E90_1|Chain... at 96%
5qikRCSB PDB    PDBbind307aa, >5QIK_1|Chain... at 98%
5qilRCSB PDB    PDBbind307aa, >5QIL_1|Chain... at 98%
5qimRCSB PDB    PDBbind306aa, >5QIM_1|Chain... at 99%
5usqRCSB PDB    PDBbind299aa, >5USQ_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6b8y
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nametransforming growth factor beta receptor I
Ligand NameD0A
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Ki=0.22nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Bioorg. Med. Chem. Vol. 26: pp. 1026-1034
Ligand Properties
Formula C17H10F4N6
Molecular Weight 374.295
Exact Mass 374.090
No. of atoms 37
No. of bonds 40
Polar Surface Area 79.38
LOGP Value 3.12      (Computed with XLOGP3)
4.39      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P36897  
Entrez Gene IDNCBI Entrez Gene ID: 7046  
ASDInformation of known allosteric effects of PDB entries

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